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Proteomics Core Facility

Proteomics Home

Rates

Resources

Protocols

Resources

  • Access to Mascot Server
    • ​ UMD Mascot Server
    • Request access, email to [email protected]
    • Matrix Science Server
  • ExPASy Proteomics Server 
    • An excellent website maintained by the Swiss Institute of Bioinformatics, this website is loaded with proteomics tools, links, and databases. 
  • Protein Prospector 
    • Protein Prospector is an on-line program developed by the UCSF Mass Spectrometry Facility. Tools for in silico digestion, fragmentation, as well as database search are available. 
  • Ionsource
    • This website is loaded with links, tutorials, charts, and tools for mass spectrometry laboratory use. 
  • Tutorial on database searching for protein identification 
    • If you have not done mass spectrometry based proteomics, this tutorial will provide you a good understanding of how mass spec data is processed to generate protein identification report. It’s somewhat superficial and old, but still, it’s a good start. 
  • Recorded web-seminars:
    • NIH Video casting events 
    • Agilent Technologies application webinars 
    • Thermo Electron application webinars 
  • ABRF Association of Biomolecular Resource Facilities
    • ABRF is a society of core facility, besides annual meetings, the society host an active discussion forum. Sign up to the email list for the discussion group or surf the archive online, you’ll find lots of postings on technical tips, problems and solutions. 
  • ABRF education website
    • You’ll find tutorials on the two major search engines, mascot and sequest, on this website. Very helpful to get started with informatics. 
  • ASMS American Society for Mass Spectrometry 
  • Thermo Omics Portal
    • ​Create an account to download a demo version of Proteome Discoverer
    • Once demo period is over, it becomes a "viewer only" version that allows you to open PD results from the Core
  • Tutorials for Proteomics Discoverer and More
    • ​A collection of blogs by Ben Orsburn. Under "userful Stuff" find a series of videos to get started with Proteome Discoverer software.
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  • Home
  • Imaging
    • Imaging Core >
      • Instruments >
        • Zeiss LSM 980
        • Leica Stellaris 8
        • Zeiss LSM710
        • DeltaVision
        • Nikon Eclipse
        • Zeiss AxioObserver
      • NEW USER GUIDE
      • RATES
      • FAQ
      • IMAGE GALLERY
    • Imaging Incubator >
      • INSTRUMENTS >
        • Zeiss LLS7
        • PerkinElmer
        • ASI diSPIM
        • JPK AFM
        • 3P
      • Rates
      • NEW USER GUIDE
  • Brain & Behavior Institute
  • Genomics